PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 489072
Common NameARALYDRAFT_489072
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family E2F/DP
Protein Properties Length: 458aa    MW: 50266.7 Da    PI: 4.3524
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
489072genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP86.61.9e-27125190171
  E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
              r+++sL+llt+kf++l++++e+gi++ln++a++L   +v  ++RRiYDi+NVLe+++liek+ kn+i+wkg
   489072 125 RYDSSLGLLTKKFINLIKQAEDGILDLNKAADTL---EV--QKRRIYDITNVLEGIGLIEKTLKNRIQWKG 190
              6899******************************...99..****************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.7E-29122192IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-17125188IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013725.9E-35125190IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023191.5E-24127190IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd146604.31E-46201306No hitNo description
SuperFamilySSF1440741.65E-31202306No hitNo description
PfamPF164212.3E-31206304IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010090Biological Processtrichome morphogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051302Biological Processregulation of cell division
GO:0051446Biological Processpositive regulation of meiotic cell cycle
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MSEEPPQFPP SKRQLHPSLS SMKPPLVAPG EYHRFDAAGG GAADQVVVSD AIVIKSTLKR  60
KTDSVNEIAE PNELNTGVLQ TPVSGKGGKA KKTSRSVKSN KSGTQASGSN AGSPGNNFAQ  120
AGTCRYDSSL GLLTKKFINL IKQAEDGILD LNKAADTLEV QKRRIYDITN VLEGIGLIEK  180
TLKNRIQWKG LDVSKPGETI ENIANLQDEV LNLTAEEARL DDQIRESQER LTSLSEDENN  240
KRLLFVTEND IKNLPCFQNK TLIAVKAPHG TTLEVPDPDE AGGYQRRYRI ILRSTMGPID  300
VYLVSQFEES FEDIPHTDEP SNVPDEPSNL PSTSGLPENH DVAMPMEEDS TERNMETQEL  360
DDTQRVYSDI ESHDFVDGIM KIVPPDLDLG VDYWFRSEVG EVSITDMWPD ESGPDWNQMI  420
TFDQDHAGPS DTALEQPKTP SSPTPEDSTA TRSSTGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A7e-25125191774PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2425800.0AF242580.1 Arabidopsis thaliana E2F transcription factor-1 E2F1 mRNA, complete cds.
GenBankAJ2945330.0AJ294533.1 Arabidopsis thaliana mRNA for E2F-related protein (e2Fb gene).
GenBankAY1364790.0AY136479.1 Arabidopsis thaliana expressed protein (At5g22220) mRNA, complete cds.
GenBankBT0066100.0BT006610.1 Arabidopsis thaliana At5g22220 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002871995.10.0hypothetical protein ARALYDRAFT_489072
SwissprotQ9FV710.0E2FB_ARATH; Transcription factor E2FB
TrEMBLD7M0V20.0D7M0V2_ARALL; Putative uncharacterized protein
STRINGfgenesh2_kg.6__2206__AT5G22220.20.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM80828121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.20.0E2F transcription factor 1